Welcome to the MEENet homepage!

MEENet (Multi Entity Embedding Network) is a goto toolkit for visualization and analysis of single cell RNA seq data. It also achieves de-novo clustering of cells and genes together using the concept of k-nearest neighbor thus forming the multi entity graph network.

Implementations

MEENEet has two different implementations:

Python package

The Python implementation includes [command line tool] for building the multi entity graph network and visualizationa and analysis pipeline for the same and an [analysis pipeline].

See the detailed documentation for installation instructions, tutorials and an overview of the full API.

Jupyter notebooks

The Jupyter notebooks are available in the github repository.